TiSA: TimeSeriesAnalysis-a pipeline for the analysis of longitudinal transcriptomics data, NAR Genom Bioinform, 5 (1), DOI 10.1093/nargab/lqad020, PubMed 36879899
Publications
MirGeneDB 2.1: toward a complete sampling of all major animal phyla
Bastian Fromm, Eirik Høye, Diana Domanska, Xiangfu Zhong, Ernesto Aparicio-Puerta, Vladimir Ovchinnikov, Sinan U Umu, Peter J Chabot, Wenjing Kang, Morteza Aslanzadeh,
Marcel Tarbier, Emilio Mármol-Sánchez, Gianvito Urgese, Morten Johansen, Eivind Hovig, Michael Hackenberg, Marc R Friedländer, Kevin J Peterson, MirGeneDB 2.1: toward a complete sampling of all major animal phyla, Nucleic Acids Research, Volume 50, Issue D1, 7 January 2022, Pages D204–D210, https://doi.org/10.1093/nar/gkab1101
A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer
Eirik Høye, Bastian Fromm, Paul HM Böttger, Diana Domanska, Annette Torgunrud, Christin Lund-Andersen, Torveig Weum Abrahamsen, Åsmund Avdem Fretland, Vegar J Dagenborg, Susanne Lorenz, Bjørn Edwin, Eivind Hovig, Kjersti Flatmark, A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer, NAR Cancer, Volume 4, Issue 1, March 2022, zcab051, https://doi.org/10.1093/narcan/zcab051
Single-cell transcriptomic analysis of human colonic macrophages reveals niche-specific subsets
Diana Domanska, Umair Majid, Victoria T. Karlsen, Marianne A. Merok, Ann-Christin Røberg Beitnes, Sheraz Yaqub, Espen S. Bækkevold, Frode L. Jahnsen; Single-cell transcriptomic analysis of human colonic macrophages reveals niche-specific subsets. J Exp Med 7 March 2022; 219 (3): e20211846. doi: https://doi.org/10.1084/jem.20211846
Calprotectin expressing donor-derived macrophages increase in acute gastrointestinal graft versus host disease
Aasebo AT, Gedde- Dahl T, Reims HM, Baekkevold ES, Jahnsen FL,
Calprotectin expressing donor-derived macrophages increase in acute gastrointestinal graft versus host disease, Transplantation and Cellular Therapy, 2022, ISSN 2666-6367, https://doi.org/10.1016/j.jtct.2022.01.028.
The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID
Safavi S, Larouche A, Zahn A, Patenaude AM, Domanska D, Dionne K, Rognes T, Dingler F, Kang SK, Liu Y, Johnson N, Hébert J, Verdun RE, Rada CA, Vega F, Nilsen H, Di Noia JM. The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID. NAR Cancer. 2020 Aug 27;2(3):zcaa019. doi: 10.1093/narcan/zcaa019. Erratum in: NAR Cancer. 2021 Jan 06;3(1):zcaa045. PMID: 33554121; PMCID: PMC7848951.
Origin of langerin (CD207)-expressing antigen presenting cells in the normal oral mucosa and in oral lichen planus lesions
Solhaug MB, Schreurs O, Schenck K, Blix IJ, Baekkevold ES (2021). Origin of langerin (CD207)-expressing antigen presenting cells in the normal oral mucosa and in oral lichen planus lesions. Eur J Oral Sci.
PubMed 34935212 DOI 10.1111/eos.12835
Response to Lauro and Zorzetti
Bartolomé-Casado R, Bækkevold ES, Jahnsen FL (2021). Response to Lauro and Zorzetti. Mucosal Immunol, 14 (6), 1395-1396. PubMed 34535772 DOI 10.1038/s41385-021-00454-y
Legends of allergology and immunology: Per Brandtzaeg – Pillar of mucosal immunology
Jahnsen FL, Johansen FE (2021). Legends of allergology and immunology: Per Brandtzaeg – Pillar of mucosal immunology. Allergy, 76 (8), 2634-2635. PubMed 33752264 DOI 10.1111/all.14824
Lung CD4+ T-cells in patients with lung fibrosis produce pro-fibrotic interleukin-13 together with interferon-γ
Sikkeland LIB, Qiao SW, Ueland T, Myrdal O, Wyrożemski Ł, Aukrust P, Jahnsen FL, Sjåheim T, Kongerud J, Molberg Ø, Lund MB, Bækkevold ES (2021)
Lung CD4+ T-cells in patients with lung fibrosis produce pro-fibrotic interleukin-13 together with interferon-γ
Eur Respir J, 57 (3)
PubMed 33154027 DOI 10.1183/13993003.00983-2020