Sinan U Umu, Karoline Rapp Vander-Elst, Victoria T Karlsen, Manto Chouliara, Espen Sønderaal Bækkevold, Frode Lars Jahnsen, Diana Domanska, Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis, GigaScience, Volume 12, 2023, giad091, https://doi.org/10.1093/gigascience/giad091
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks
Kalyanasundaram S, Lefol Y, Gundersen S, Rognes T, Alsøe L, Nilsen HL, Hovig E, Sandve GK, Domanska D. hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks. PLoS One. 2023 Jul 19;18(7):e0286330. doi: 10.1371/journal.pone.0286330. PMID: 37467208; PMCID: PMC10355376.
A Roadmap for the Human Gut Cell Atlas
Zilbauer, M., James, K.R., Kaur, M. et al. A Roadmap for the Human Gut Cell Atlas. Nat Rev Gastroenterol Hepatol 20, 597–614 (2023). https://doi.org/10.1038/s41575-023-00784-1
JahnsenLab with new paper: Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis
JahnsenLab with new paper: Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis. Click here to read more.
JahnsenLab members are co-authors on a Roadmap paper in Nature reviews
JahnsenLab members are co-authors on a Roadmap paper in Nature reviews. Click here to read more.
Congratulations to Hanna Johannessen
Hanna is co-author on a Nature Communications paper: “Antibody blockade of Jagged1 attenuates choroidal neovascularization”. Click here to read more.
JahnsenLab with new paper on regulatory T cells in the gut
JahnsenLab with new paper on regulatory T cells in the gut. Click here to read more.
Diana and Umair win prize for best scientific paper at Oslo University Hospital in 2022
Diana and Umair win prize for best scientific paper at Oslo University Hospital in 2022
TiSA: TimeSeriesAnalysis-a pipeline for the analysis of longitudinal transcriptomics data
TiSA: TimeSeriesAnalysis-a pipeline for the analysis of longitudinal transcriptomics data, NAR Genom Bioinform, 5 (1), DOI 10.1093/nargab/lqad020, PubMed 36879899
Congratulations to Naveen Parmar
Naveen participated in sixth annual conference organized by Digital Life Norway Research School ( 13-15 June 2022) and his colonoids confocal image was awarded best scientific image award. He received 5000 NOK as a prize money for his confocal image.
Human gut mini organ- Colonoid
Green (Ki67) shows cells are in proliferation stage.
Red is Rhodamine-phalloidin binds to actin.
Blue is DNA