TiSA: TimeSeriesAnalysis-a pipeline for the analysis of longitudinal transcriptomics data

27 September 2022

Lefol Y, Korfage T, Mjelle R, Prebensen C, Lüders T, Müller B, Krokan H, Sarno A, Alsøe L, CONSORTIUM LEMONAID, Berdal JE, Sætrom P, Nilsen H, Domanska D (2023) TiSA: TimeSeriesAnalysis-a pipeline for the analysis of longitudinal transcriptomics data, NAR Genom Bioinform, 5 (1), DOI 10.1093/nargab/lqad020, PubMed 36879899

Congratulations to Naveen Parmar

1 September 2022

Naveen participated in sixth annual conference organized by Digital Life Norway Research School ( 13-15 June 2022) and his colonoids confocal image was awarded best scientific image award. He received 5000 NOK as a prize money for his confocal image.

Keep your gut happy and healthy
Human gut mini organ- Colonoid
Green (Ki67) shows cells are in proliferation stage.
Red is Rhodamine-phalloidin binds to actin.
Blue is DNA

JEM Clinical Immunology Collection 2022

15 June 2022

Research article: Diana Domanska, Umair Majid, Victoria T. Karlsen, Marianne A. Merok, Ann-Christin Røberg Beitnes, Sheraz Yaqub, Espen S. Bækkevold, Frode L. Jahnsen; Single-cell transcriptomic analysis of human colonic macrophages reveals niche-specific subsets. J Exp Med 7 March 2022; 219 (3): e20211846. doi: https://doi.org/10.1084/jem.20211846 is highlighted in JEM Clinical Immunology Collection 2022.

MirGeneDB 2.1: toward a complete sampling of all major animal phyla

25 May 2022

Bastian Fromm, Eirik Høye, Diana Domanska, Xiangfu Zhong, Ernesto Aparicio-Puerta, Vladimir Ovchinnikov, Sinan U Umu, Peter J Chabot, Wenjing Kang, Morteza Aslanzadeh,
Marcel Tarbier, Emilio Mármol-Sánchez, Gianvito Urgese, Morten Johansen, Eivind Hovig, Michael Hackenberg, Marc R Friedländer, Kevin J Peterson, MirGeneDB 2.1: toward a complete sampling of all major animal phyla, Nucleic Acids Research, Volume 50, Issue D1, 7 January 2022, Pages D204–D210, https://doi.org/10.1093/nar/gkab1101

A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer

25 May 2022

Eirik Høye, Bastian Fromm, Paul HM Böttger, Diana Domanska, Annette Torgunrud, Christin Lund-Andersen, Torveig Weum Abrahamsen, Åsmund Avdem Fretland, Vegar J Dagenborg, Susanne Lorenz, Bjørn Edwin, Eivind Hovig, Kjersti Flatmark, A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer, NAR Cancer, Volume 4, Issue 1, March 2022, zcab051, https://doi.org/10.1093/narcan/zcab051